Publications

Please cite these papers when you publish results created on the ClusPro server.

Kozakov D, Hall DR, Xia B, Porter KA, Padhorny D, Yueh C, Beglov D, Vajda S. The ClusPro web server for protein-protein docking. Nature Protocols. 2017 Feb;12(2):255-278 ; pdf

Kozakov D, Beglov D, Bohnuud T, Mottarella S, Xia B, Hall DR, Vajda, S. How good is automated protein docking? Proteins: Structure, Function, and Bioinformatics, 2013 Aug ;  pdf

Kozakov D, Brenke R, Comeau SR, Vajda S. PIPER: An FFT-based protein docking program with pairwise potentials. Proteins. 2006 Aug 24;  pdf

Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: an automated docking and discrimination method for the prediction of protein complexes. Bioinformatics. 2004 Jan 1;  pdf

Comeau SR, Gatchell DW, Vajda S, Camacho CJ. ClusPro: a fully automated algorithm for protein-protein docking Nucleic Acids Research. 2004 Jul 1;  pdf

And this paper, if Antibody mode is used to create the results.

Brenke R, Hall DR, Chuang G-Y, Comeau SR, Bohnuud T, Beglov D, Schueler-Furman O, Vajda S, Kozakov D. 2012. Application of asymmetric statistical potentials to antibody-protein docking. Bioinformatics. 28(20):2608-2614;  pdf

ClusPro should only be used for noncommercial purposes.
ABC Group and Structural Bioinformatics Lab
Boston University and Stony Brook University